Variable Feature Value Coefficient N N.not.0 P.value Q.value after_abx k__Bacteria_p__Firmicutes_c__Clostridia_o___f___g__ after_abx TRUE -0.0307119663547016 779 773 0.000827247214247013 0.0156157076881149 after_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Plesiomonas after_abx TRUE 0.00326086717146968 779 297 0.00117330370444142 0.0207283654451318 after_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__unclassified after_abx TRUE -0.0293801266106354 779 773 0.00141453470416869 0.0239659281435793 after_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__unclassified_f__unclassified after_abx TRUE -0.0293801266106354 779 773 0.00141453470416869 0.0239659281435793 after_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Enterobacter after_abx TRUE 0.00711592249030294 779 470 0.00234611365000719 0.036189678466902 after_abx k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae_g__Bacteroides after_abx TRUE 0.109908704433035 779 768 0.00554164876497869 0.0720414339447229 after_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__unclassified after_abx TRUE -0.0201028217692915 779 773 0.00617183911972372 0.0770827278578183 after_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f___g__ after_abx TRUE -0.0201028217692915 779 773 0.00617183911972372 0.0770827278578183 after_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Lachnospira after_abx TRUE -0.03042153016262 779 725 0.00676155256187752 0.0831912449131002 after_abx k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae after_abx TRUE 0.110229663454782 779 768 0.00739131687905639 0.0879695620399481 after_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Roseburia after_abx TRUE -0.0395340393135637 779 746 0.00784828364306454 0.0921727402853092 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Rikenellaceae age_at_collection 0.000163393918198096 779 648 6.14080887782009e-18 8.46203463363608e-15 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Rikenellaceae_g__ age_at_collection 0.000163393918198096 779 648 6.14080887782009e-18 8.46203463363608e-15 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f___Odoribacteraceae__g__Odoribacter age_at_collection 3.84757477652388e-05 779 294 1.6381174206959e-15 1.69299435428921e-12 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f___Barnesiellaceae_ age_at_collection 7.55283728759486e-05 779 374 5.9462675418749e-15 4.09697833635181e-12 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f___Barnesiellaceae__g__ age_at_collection 7.55283728759486e-05 779 374 5.9462675418749e-15 4.09697833635181e-12 age_at_collection k__Bacteria_p__Actinobacteria age_at_collection -0.000199089992343692 779 771 2.86940870296009e-13 1.07837596163973e-10 age_at_collection k__Bacteria_p__Actinobacteria_c__Actinobacteria age_at_collection -0.000199089992343692 779 771 2.86940870296009e-13 1.07837596163973e-10 age_at_collection k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f__Bifidobacteriaceae age_at_collection -0.00019799743155105 779 771 3.87624485048067e-13 1.09624608388581e-10 age_at_collection k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f__Bifidobacteriaceae_g__Bifidobacterium age_at_collection -0.00019799743155105 779 771 3.87624485048067e-13 1.09624608388581e-10 age_at_collection k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales age_at_collection -0.000198165673472451 779 771 3.91460523476111e-13 1.09624608388581e-10 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__unclassified age_at_collection 6.00266147709562e-05 779 773 4.24284889747773e-13 1.09624608388581e-10 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f___g__ age_at_collection 6.00266147709562e-05 779 773 4.24284889747773e-13 1.09624608388581e-10 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Anaerostipes age_at_collection 1.98968971925926e-05 779 438 1.71285829461824e-12 3.54047809497591e-10 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f___Odoribacteraceae_ age_at_collection 4.03947593324225e-05 779 333 5.73057201577709e-12 1.12810403396297e-09 age_at_collection k__Bacteria_p__Proteobacteria_c__Alphaproteobacteria_o__RF32 age_at_collection 8.18045064449589e-05 779 282 1.0118460910592e-11 1.81868336540814e-09 age_at_collection k__Bacteria_p__Proteobacteria_c__Alphaproteobacteria_o__RF32_f___g__ age_at_collection 8.18045064449589e-05 779 282 1.0118460910592e-11 1.81868336540814e-09 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Lachnobacterium age_at_collection 1.34759044592494e-05 779 525 1.28091943545514e-11 2.20638372757148e-09 age_at_collection k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f__Erysipelotrichaceae_g__Holdemania age_at_collection 1.11158647446742e-05 779 295 8.13411616316507e-11 1.34505744874098e-08 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae age_at_collection 0.000162135295154091 779 779 1.32660187732441e-10 2.10929698494581e-08 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Enterococcaceae_g__Enterococcus age_at_collection -5.75332695936991e-06 779 337 1.9863318232378e-10 3.04129472491299e-08 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales age_at_collection -9.69624643634338e-05 779 755 4.4545548647649e-10 5.94036445514133e-08 age_at_collection k__Bacteria_p__Proteobacteria_c__Alphaproteobacteria_o__RF32_f__unclassified age_at_collection 7.39324473725144e-05 779 282 9.29793570497581e-10 1.20117706888656e-07 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae age_at_collection -9.46441173203624e-05 779 755 1.24830964888883e-09 1.51779767309013e-07 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Enterococcaceae age_at_collection -5.83675915004464e-06 779 351 1.34458187247587e-09 1.58814327451864e-07 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__ age_at_collection 0.000100547800654601 779 765 5.94285494786115e-09 6.28060563548974e-07 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Enterobacter age_at_collection -1.48941993932797e-05 779 470 1.75965360697389e-08 1.77424585639758e-06 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Ruminococcus age_at_collection 9.03807610795408e-05 779 770 2.20994295550515e-08 2.1246288786182e-06 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria age_at_collection -0.000103091873393785 779 777 7.0403560978963e-08 6.3907314808843e-06 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Veillonellaceae_g__Veillonella age_at_collection -4.56037990958735e-05 779 743 1.080022318996e-07 9.30169222235302e-06 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia age_at_collection 0.000250433938272523 779 779 1.19339843309023e-07 9.86701824478999e-06 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales age_at_collection 0.000248852541992421 779 779 1.40178105085065e-07 1.11489943538591e-05 age_at_collection k__Bacteria_p__Bacteroidetes age_at_collection 0.000248845480860424 779 779 1.40238922690051e-07 1.11489943538591e-05 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__ age_at_collection -5.30342964227237e-06 779 423 4.29297538040946e-07 3.0598552107953e-05 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Escherichia age_at_collection -2.9688604568657e-05 779 696 1.63153584377016e-06 0.000105387018408529 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f___Paraprevotellaceae__g__Paraprevotella age_at_collection 3.59359747937143e-05 779 134 2.43702579270728e-06 0.000146009632276114 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Gemellales_f__Gemellaceae age_at_collection -4.57034362542814e-06 779 472 3.8149701838368e-06 0.000207514299210281 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales age_at_collection -4.64008927890971e-05 779 772 8.41015564367317e-06 0.000391981392530907 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Gemellales age_at_collection -4.38434743093075e-06 779 472 8.41787062812165e-06 0.000391981392530907 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Gemellales_f__Gemellaceae_g__ age_at_collection -4.38434743093075e-06 779 472 8.41787062812165e-06 0.000391981392530907 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli age_at_collection -4.76091099700568e-05 779 775 1.03400439296238e-05 0.000440677748505824 age_at_collection k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f__unclassified age_at_collection -4.90052335047162e-06 779 415 1.06699532814681e-05 0.000441095868655891 age_at_collection k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f___g__ age_at_collection -4.8526066464269e-06 779 415 1.2912113856804e-05 0.000511529472011846 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__Streptococcus age_at_collection -3.31802044553837e-05 779 764 2.81411661487274e-05 0.000961451081478009 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae age_at_collection -3.6213397205047e-05 779 768 3.08193770463177e-05 0.00103583174560551 age_at_collection k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria age_at_collection 2.21398167254059e-05 779 363 3.44242851014703e-05 0.00111232023967989 age_at_collection k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales age_at_collection 2.21398167254059e-05 779 363 3.44242851014703e-05 0.00111232023967989 age_at_collection k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales_f__Desulfovibrionaceae age_at_collection 2.21398167254059e-05 779 363 3.44242851014703e-05 0.00111232023967989 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Lactobacillaceae age_at_collection -6.84049781022807e-06 779 544 5.39535995082136e-05 0.00160463439112917 age_at_collection k__Bacteria_p__Firmicutes_c__Erysipelotrichi age_at_collection -4.9174039528129e-05 779 771 7.26896821930193e-05 0.00211619117032353 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Oscillospira age_at_collection 3.73209844448361e-05 779 773 0.00011948017817439 0.00320734452320084 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Carnobacteriaceae age_at_collection -7.4880748916741e-06 779 658 0.000189040948880677 0.00482404495476986 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Carnobacteriaceae_g__Granulicatella age_at_collection -7.4880748916741e-06 779 658 0.000189040948880677 0.00482404495476986 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Clostridiaceae_g__ age_at_collection 1.06370829609367e-05 779 665 0.000192990626708078 0.00489462117062083 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Roseburia age_at_collection 6.22854688255816e-05 779 746 0.000206904714161727 0.00518390356572474 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Lactobacillaceae_g__Lactobacillus age_at_collection -6.11110153096387e-06 779 503 0.000211114666294597 0.00525751825579436 age_at_collection k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales_f__Desulfovibrionaceae_g__Bilophila age_at_collection 1.66362189840979e-05 779 340 0.000319908521326349 0.00738827836403982 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Plesiomonas age_at_collection -4.12295123104713e-06 779 297 0.000325871903733097 0.00748419138907013 age_at_collection k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Actinomycetales_f__Actinomycetaceae_g__Actinomyces age_at_collection -4.6637471102569e-06 779 564 0.000402933775578394 0.00881337686900043 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__Coriobacteriaceae age_at_collection -3.13805248331808e-05 779 748 0.000512814944198086 0.0106531506498236 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Porphyromonadaceae_g__Parabacteroides age_at_collection 5.3005741614691e-05 779 632 0.000722340810311428 0.0138248005084604 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Porphyromonadaceae age_at_collection 5.13128932364233e-05 779 674 0.00115770262847563 0.0205405264640268 age_at_collection k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales age_at_collection -3.84417838105206e-05 779 771 0.00212596304530393 0.0334172290086937 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pseudomonadales_f__Pseudomonadaceae_g__Pseudomonas age_at_collection -2.09077377721069e-06 779 275 0.00374809488586161 0.0534297388212134 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pseudomonadales_f__Pseudomonadaceae age_at_collection -2.05145432670121e-06 779 275 0.00444815206820908 0.0614130822463689 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales age_at_collection 2.68102605584675e-05 779 777 0.00490327450877056 0.0658121325300568 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__Coriobacteriaceae_g__Eggerthella age_at_collection -9.7664679518987e-06 779 616 0.00498179352385258 0.0662210110212429 age_at_collection k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae_g__Bacteroides age_at_collection 0.000123712723194079 779 768 0.00544841628617903 0.0712776991362788 age_at_collection k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Actinomycetales_f__Actinomycetaceae age_at_collection -3.97962748278584e-06 779 613 0.00579775917752783 0.0744345852170809 age_at_collection k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f___Coprobacillaceae_ age_at_collection -3.16028241484079e-05 779 770 0.0061089391092057 0.0770827278578183 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Veillonellaceae_g__ age_at_collection 4.77387489815703e-05 779 695 0.00700581998322888 0.0854338047512336 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pseudomonadales age_at_collection -2.45877541635607e-06 779 323 0.00728065086762255 0.0872411903963815 age_at_collection k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Actinomycetales age_at_collection -3.96715701755193e-06 779 643 0.00845340984013092 0.0976156320645285 age_at_collection k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f___Coprobacillaceae__g__ age_at_collection -3.04867009462608e-05 779 769 0.00879929666125352 0.0996610750619782 Any_baby_formula k__Bacteria_p__Proteobacteria Any_baby_formula TRUE -0.132542133723952 779 779 0.00340110236919823 0.049682534255355 Any_baby_formula k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pasteurellales Any_baby_formula TRUE -0.0656262549895462 779 740 0.00616634365109138 0.0770827278578183 Any_baby_formula k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pasteurellales_f__Pasteurellaceae Any_baby_formula TRUE -0.0656262549895462 779 740 0.00616634365109138 0.0770827278578183 Any_baby_formula k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pasteurellales_f__Pasteurellaceae_g__Haemophilus Any_baby_formula TRUE -0.0614138986941192 779 739 0.00825442538981585 0.0958533555098279 bf_length k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Porphyromonadaceae bf_length -0.00251828365784794 779 674 2.56958553923675e-05 0.000900225984678368 bf_length k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Porphyromonadaceae_g__Parabacteroides bf_length -0.00240476408899221 779 632 5.29943475084922e-05 0.00158752632318918 bf_length k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Veillonellaceae bf_length 0.00231455741990581 779 773 0.00325135524073637 0.0478331052142497 bf_length k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae bf_length -0.00253058522204182 779 779 0.008304500018047 0.0961647144946955 Breast_feeding_end k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f__unclassified Breast_feeding_end TRUE -0.00445630950433599 779 415 1.19278428110327e-09 1.49423339941846e-07 Breast_feeding_end k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f___g__ Breast_feeding_end TRUE -0.00443557587062004 779 415 1.42290351058008e-09 1.63396753131612e-07 Breast_feeding_end k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales Breast_feeding_end TRUE -0.0418447297001504 779 772 3.64871587264699e-09 4.0196357479431e-07 Breast_feeding_end k__Bacteria_p__Firmicutes_c__Bacilli Breast_feeding_end TRUE -0.0411178977528887 779 775 1.82759618889338e-08 1.79887682021077e-06 Breast_feeding_end k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales Breast_feeding_end TRUE -0.0848541030821146 779 771 3.14002961642275e-06 0.000182106930340343 Breast_feeding_end k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f__Bifidobacteriaceae Breast_feeding_end TRUE -0.0847134970443716 779 771 3.21572470122038e-06 0.000182106930340343 Breast_feeding_end k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f__Bifidobacteriaceae_g__Bifidobacterium Breast_feeding_end TRUE -0.0847134970443716 779 771 3.21572470122038e-06 0.000182106930340343 Breast_feeding_end k__Bacteria_p__Actinobacteria Breast_feeding_end TRUE -0.0843490226545004 779 771 3.37571594996618e-06 0.000186069463162136 Breast_feeding_end k__Bacteria_p__Actinobacteria_c__Actinobacteria Breast_feeding_end TRUE -0.0843490226545004 779 771 3.37571594996618e-06 0.000186069463162136 Breast_feeding_end k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae_g__ Breast_feeding_end TRUE 0.0370171881647662 779 697 9.15671232639914e-05 0.00257509175219959 Breast_feeding_end k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae Breast_feeding_end TRUE -0.033252065576819 779 755 0.0011104285501167 0.0200459022977399 Breast_feeding_end k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales Breast_feeding_end TRUE -0.0319929013417156 779 755 0.00163726207038884 0.026752732802322 Breast_feeding_end k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Enterobacter Breast_feeding_end TRUE -0.00557083906591823 779 470 0.0032129174143508 0.0474364306818793 Breast_feeding_end k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Plesiomonas Breast_feeding_end TRUE -0.00235634534735614 779 297 0.0037815999228312 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k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae_g__Bacteroides deliveryvaginal 0.0863100977094618 779 768 0.00485134912212908 0.0653272875273017 delivery k__Bacteria_p__Firmicutes deliveryvaginal -0.0685216820718077 779 779 0.00723427218168604 0.0872411903963815 delivery k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f___Coprobacillaceae__g__Coprobacillus deliveryvaginal -0.00414961171029963 779 428 0.00796212562443006 0.0932448366328438 Eggs k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g___Ruminococcus_ Eggs TRUE 0.0155998244149448 779 776 0.00131691982376956 0.0225898197156155 Fish k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Lachnospira Fish TRUE -0.023846559497229 779 725 0.000253986009249664 0.00610452419905878 Fish k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Roseburia Fish TRUE -0.0271500680006513 779 746 0.00163672024884939 0.026752732802322 Fish k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Ruminococcus Fish TRUE -0.0237311095660854 779 770 0.00445668231105725 0.0614130822463689 Fish k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae Fish TRUE -0.0347332590400752 779 779 0.00804674425543188 0.0937049035266349 Fruits_and_berries k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Anaerostipes Fruits_and_berries TRUE 0.0143457646443089 779 438 0.00184119302586707 0.0296167002682275 Fruits_and_berries k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__Coriobacteriaceae_g__Eggerthella Fruits_and_berries TRUE -0.0165234794797626 779 616 0.00444238993401039 0.0614130822463689 Fruits_and_berries k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales_f__Desulfovibrionaceae_g__Bilophila Fruits_and_berries TRUE 0.0200989564824752 779 340 0.0064817773984235 0.0802265501948585 gender k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Veillonellaceae_g__Veillonella genderMale -0.0165800973327082 779 743 8.92778969954641e-07 5.95281977708465e-05 gender k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__Coriobacteriaceae_g__ genderMale 0.00369818664707078 779 453 0.000223973044952238 0.005511336713289 gender k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Veillonellaceae_g__ genderMale 0.0237470026231425 779 695 0.000555611144418652 0.0113049056826511 hla_risk_class k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__Coriobacteriaceae_g__ hla_risk_class -0.00217753305395381 779 453 0.00419349210464902 0.0583700214162258 hla_risk_class k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae hla_risk_class -0.0218572088659643 779 779 0.00503994666204791 0.0667792932721348 hla_risk_class k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f___Odoribacteraceae_ hla_risk_class -0.00483289395328517 779 333 0.0071041332723967 0.086377902788494 Meat k__Bacteria_p__Firmicutes Meat TRUE -0.174533054264752 779 779 2.78706559660174e-06 0.000164596131090737 Meat k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Coprococcus Meat TRUE -0.0380037556569297 779 772 4.14557707509323e-06 0.000216934375043486 Meat k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__unclassified Meat TRUE -0.0343409941575596 779 773 2.42206834494895e-05 0.000870680916349475 Meat k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f___g__ Meat TRUE -0.0343409941575596 779 773 2.42206834494895e-05 0.000870680916349475 Meat k__Bacteria_p__Firmicutes_c__Clostridia Meat TRUE -0.145686643989355 779 779 4.09039662092002e-05 0.00127140598728446 Meat k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__ Meat TRUE -0.070951821342346 779 765 7.415069938951e-05 0.00212874299497385 Meat k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__unclassified Meat TRUE -0.0405009947151479 779 773 0.000161932422773707 0.00421024299211639 Meat k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f___g__ Meat TRUE -0.0405009947151479 779 773 0.000161932422773707 0.00421024299211639 Meat k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae_g__Bacteroides Meat TRUE 0.161291736441053 779 768 0.000269111149158338 0.00643066757584144 Meat k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae Meat TRUE 0.162316351213892 779 768 0.000414321121589938 0.00896755767881049 Meat k__Bacteria_p__Bacteroidetes Meat TRUE 0.160102865167059 779 779 0.000488427752494166 0.010254431567768 Meat k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales Meat TRUE 0.160098905075318 779 779 0.000488660623814777 0.010254431567768 Meat k__Bacteria_p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales_f__Alcaligenaceae Meat TRUE 0.0676382836099675 779 719 0.000570538344176782 0.0113394495905135 Meat k__Bacteria_p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales_f__Alcaligenaceae_g__Sutterella Meat TRUE 0.0676382836099675 779 719 0.000570538344176782 0.0113394495905135 Meat k__Bacteria_p__Proteobacteria_c__Betaproteobacteria Meat TRUE 0.0666779501549702 779 750 0.000620041097382006 0.0122059518884629 Meat k__Bacteria_p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales Meat TRUE 0.0665201461900987 779 736 0.000672181017120437 0.0131075298338485 Meat k__Bacteria_p__Bacteroidetes_c__Bacteroidia Meat TRUE 0.156070661126157 779 779 0.000705958215556394 0.0135740988981867 Meat k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Actinomycetales_f__Actinomycetaceae_g__Parascardovia Meat TRUE -0.00293537380728425 779 362 0.000920505271657573 0.0172188633168887 Meat k__Bacteria_p__Proteobacteria Meat TRUE 0.0726334092323193 779 779 0.00103668843407651 0.0191244075367906 Meat k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Enterobacter Meat TRUE 0.00842523049898725 779 470 0.00112629815870611 0.0202439851656133 Meat k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales Meat TRUE -0.111683251602026 779 779 0.00198703301347964 0.0317158087943043 Meat k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f___Coprobacillaceae__g__ Meat TRUE -0.0352901446207385 779 769 0.00236208962618333 0.0363006636232041 Meat k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Plesiomonas Meat TRUE 0.00347660626765453 779 297 0.00316022783013623 0.0468257413970723 Meat k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f___Coprobacillaceae_ Meat TRUE -0.0324510799456103 779 770 0.00467373958312805 0.0635567086731952 Meat k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g___Ruminococcus_ Meat TRUE -0.025643206957305 779 776 0.00522333966898806 0.0687684273617728 Meat k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales Meat TRUE 0.0448768130842378 779 755 0.00532253927471105 0.0698519916243031 Meat k__Bacteria_p__Actinobacteria_c__Actinobacteria_o__Actinomycetales_f__Actinomycetaceae_g__Actinomyces Meat TRUE -0.00348366153686818 779 564 0.00683077711010426 0.0837935684663829 Meat k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__Coriobacteriaceae_g__Collinsella Meat TRUE 0.0213580136005329 779 524 0.00872621420614446 0.0993778774881576 num_preceeding_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Clostridiaceae_g__Clostridium num_preceeding_abx -0.00179775831540904 779 687 1.16907385503231e-07 9.86316595245623e-06 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pasteurellales_f__Pasteurellaceae_g__Haemophilus num_preceeding_abx -0.00707226589547413 779 739 1.80083646945428e-06 0.000114533199457292 num_preceeding_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Clostridiaceae num_preceeding_abx -0.0022083043728793 779 750 5.82624051996615e-06 0.000293727784262684 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pasteurellales num_preceeding_abx -0.00707730276551452 779 740 6.32380712612735e-06 0.000311221650707267 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pasteurellales_f__Pasteurellaceae num_preceeding_abx -0.00707730276551452 779 740 6.32380712612735e-06 0.000311221650707267 num_preceeding_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Peptostreptococcaceae_g__ num_preceeding_abx -0.00290520473260389 779 720 1.63682378805949e-05 0.000632395284097002 num_preceeding_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Peptostreptococcaceae num_preceeding_abx -0.00289246569485481 779 720 1.8131406509734e-05 0.000687662701937984 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria num_preceeding_abx -0.0100891167051939 779 777 4.05255308164641e-05 0.00126923509654427 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Escherichia num_preceeding_abx -0.00315811275677184 779 696 7.98023496963209e-05 0.00225960899756569 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales_f__Desulfovibrionaceae_g__Bilophila num_preceeding_abx 0.00224724835749592 779 340 0.000213432083446615 0.00528340259262459 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Citrobacter num_preceeding_abx -0.000337279093932378 779 262 0.000585938324043072 0.0115898039789189 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae num_preceeding_abx -0.00663559627544806 779 755 0.00120307484909659 0.0211638784092141 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales num_preceeding_abx -0.00643792607581496 779 755 0.0016080260538297 0.026590318826128 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria num_preceeding_abx 0.00209334930241056 779 363 0.00275343739756211 0.0410928166119919 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales num_preceeding_abx 0.00209334930241056 779 363 0.00275343739756211 0.0410928166119919 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales_f__Desulfovibrionaceae num_preceeding_abx 0.00209334930241056 779 363 0.00275343739756211 0.0410928166119919 num_preceeding_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__unclassified num_preceeding_abx -0.00407974066708339 779 773 0.00359542396778686 0.0517891382677035 num_preceeding_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f___g__ num_preceeding_abx -0.00407974066708339 779 773 0.00359542396778686 0.0517891382677035 num_preceeding_abx k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Plesiomonas num_preceeding_abx -0.00042787241537055 779 297 0.00406250768833417 0.0573187944831858 num_preceeding_abx k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Veillonellaceae_g__ num_preceeding_abx -0.00599706926788508 779 695 0.00868925213971952 0.0992554032006588 Oat k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Escherichia Oat TRUE -0.0181999540812532 779 696 2.26351112281419e-05 0.000828084511656094 Oat k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Plesiomonas Oat TRUE -0.0027861831298445 779 297 0.000788842770975221 0.0149590642899613 Oat k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales Oat TRUE -0.031650879036175 779 755 0.00514492744848304 0.0679524922429037 Root_vegetables k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f__Erysipelotrichaceae_g__Holdemania Root_vegetables TRUE 0.0122075280716022 779 295 4.91658379743549e-05 0.00149449686901458 Root_vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__ Root_vegetables TRUE 0.113320733422758 779 765 0.00011592611819556 0.00313227825242121 Root_vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Veillonellaceae_g__Dialister Root_vegetables TRUE -0.00573404498176659 779 268 0.000697508059253345 0.0134742912007165 Root_vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Veillonellaceae_g__Megasphaera Root_vegetables TRUE -0.00257648240500026 779 289 0.00122970600803527 0.0214919300784654 Root_vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales Root_vegetables TRUE 0.0507079766241453 779 777 0.00229077666216777 0.0357361159298172 Root_vegetables k__Bacteria_p__Proteobacteria_c__Betaproteobacteria Root_vegetables TRUE -0.101607006384066 779 750 0.00249037067852188 0.0379896397970828 Root_vegetables k__Bacteria_p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales Root_vegetables TRUE -0.101735398094267 779 736 0.0025624007034028 0.038686407847093 Root_vegetables k__Bacteria_p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales_f__Alcaligenaceae Root_vegetables TRUE -0.102088827862464 779 719 0.00256412088778507 0.038686407847093 Root_vegetables k__Bacteria_p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales_f__Alcaligenaceae_g__Sutterella Root_vegetables TRUE -0.102088827862464 779 719 0.00256412088778507 0.038686407847093 Root_vegetables k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae_g__Bacteroides Root_vegetables TRUE -0.218498865914469 779 768 0.0041333493881279 0.0579464287931847 Root_vegetables k__Bacteria_p__Firmicutes_c__Bacilli_o__Gemellales_f__Gemellaceae Root_vegetables TRUE 0.00496361676407422 779 472 0.00414497044614588 0.0579464287931847 Root_vegetables k__Bacteria_p__Firmicutes_c__Bacilli_o__Gemellales Root_vegetables TRUE 0.00477619778444568 779 472 0.0057613662377744 0.0741977820154498 Root_vegetables k__Bacteria_p__Firmicutes_c__Bacilli_o__Gemellales_f__Gemellaceae_g__ Root_vegetables TRUE 0.00477619778444568 779 472 0.0057613662377744 0.0741977820154498 Root_vegetables k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae Root_vegetables TRUE -0.215165848952445 779 768 0.00653131839309486 0.0805984186180721 Root_vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__Coriobacteriaceae Root_vegetables TRUE 0.040522872076435 779 748 0.0087647610390362 0.099542643229054 seroconverted k__Bacteria_p__Firmicutes_c__Bacilli_o__Gemellales_f__Gemellaceae seroconverted TRUE 0.00341767908518831 779 472 7.74279108776063e-05 0.00220749643840017 seroconverted k__Bacteria_p__Firmicutes_c__Bacilli_o__Gemellales seroconverted TRUE 0.00337764327798371 779 472 9.52276043977547e-05 0.00260709216278356 seroconverted k__Bacteria_p__Firmicutes_c__Bacilli_o__Gemellales_f__Gemellaceae_g__ seroconverted TRUE 0.00337764327798371 779 472 9.52276043977547e-05 0.00260709216278356 seroconverted k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales_f__Desulfovibrionaceae_g__Bilophila seroconverted TRUE -0.0145551203098037 779 340 0.000272831069467196 0.00648208989182408 seroconverted k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria seroconverted TRUE -0.0166547181589602 779 363 0.000308798096348179 0.00721226740284391 seroconverted k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales seroconverted TRUE -0.0166547181589602 779 363 0.000308798096348179 0.00721226740284391 seroconverted k__Bacteria_p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales_f__Desulfovibrionaceae seroconverted TRUE -0.0166547181589602 779 363 0.000308798096348179 0.00721226740284391 seroconverted k__Bacteria_p__Cyanobacteria_c__Chloroplast seroconverted TRUE 0.00431786481460435 779 400 0.000336289098816969 0.00755553877450734 seroconverted k__Bacteria_p__Cyanobacteria_c__Chloroplast_o__Streptophyta seroconverted TRUE 0.00431786481460435 779 400 0.000336289098816969 0.00755553877450734 seroconverted k__Bacteria_p__Cyanobacteria_c__Chloroplast_o__Streptophyta_f__unclassified seroconverted TRUE 0.00431786481460435 779 400 0.000336289098816969 0.00755553877450734 seroconverted k__Bacteria_p__Cyanobacteria_c__Chloroplast_o__Streptophyta_f___g__ seroconverted TRUE 0.00431786481460435 779 400 0.000336289098816969 0.00755553877450734 seroconverted k__Bacteria_p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales_f__Alcaligenaceae seroconverted TRUE -0.056049513348917 779 719 0.00109664814448928 0.0198839624092924 seroconverted k__Bacteria_p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales_f__Alcaligenaceae_g__Sutterella seroconverted TRUE -0.056049513348917 779 719 0.00109664814448928 0.0198839624092924 seroconverted k__Bacteria_p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales seroconverted TRUE -0.0556456004889004 779 736 0.00114402856852376 0.0203854056132638 seroconverted k__Bacteria_p__Firmicutes_c__Erysipelotrichi seroconverted TRUE 0.0346753578426045 779 771 0.00135847039166744 0.0232062669386496 seroconverted k__Bacteria_p__Proteobacteria_c__Betaproteobacteria seroconverted TRUE -0.0543264195572583 779 750 0.00142762101280927 0.0240401828925996 seroconverted k__Bacteria_p__Cyanobacteria seroconverted TRUE 0.00667018581341204 779 494 0.00414904279699629 0.0579464287931847 seroconverted k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales seroconverted TRUE 0.0291060517182937 779 771 0.00724204678098809 0.0872411903963815 Vegetables k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f__Erysipelotrichaceae_g__Holdemania Vegetables TRUE -0.0129710500411847 779 295 3.94162090118222e-08 3.70333200124711e-06 Vegetables k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Enterococcaceae_g__Enterococcus Vegetables TRUE 0.00451255310999118 779 337 0.000195939698921503 0.00493911411793593 Vegetables k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Enterococcaceae Vegetables TRUE 0.00456235271617409 779 351 0.000411551836988928 0.00895450154795909 Vegetables k__Bacteria_p__Firmicutes_c__Bacilli Vegetables TRUE 0.0511885909045446 779 775 0.000550449857524081 0.0113049056826511 Vegetables k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales Vegetables TRUE 0.0487370608403738 779 772 0.000685922941229167 0.0133127015917436 Vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__Coriobacteriaceae Vegetables TRUE -0.0371425689701509 779 748 0.00243847598240992 0.0373357767084542 Vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__Coriobacteriaceae_g__Collinsella Vegetables TRUE -0.0313989021477265 779 524 0.00459355772040549 0.0630889289573299