Variable Feature Value Coefficient N N.not.0 P.value Q.value after_abx k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Prevotellaceae after_abx TRUE -0.00821796911822343 524 323 0.00192563576822298 0.0486735168648702 after_abx k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Prevotellaceae_g__Prevotella after_abx TRUE -0.00821796911822343 524 323 0.00192563576822298 0.0486735168648702 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__unclassified age_at_collection 0.000156685427101217 524 345 6.59561115849153e-34 1.17533790844319e-30 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f___g__ age_at_collection 0.000156685427101217 524 345 6.59561115849153e-34 1.17533790844319e-30 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae age_at_collection 0.000702515048232 524 447 5.48592403620914e-31 6.51727775501646e-28 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Dorea age_at_collection 2.93872510641144e-05 524 206 4.36644398925036e-18 1.49260254117753e-15 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria age_at_collection -0.000907300500346254 524 524 1.38678278207283e-13 3.08905864706724e-11 age_at_collection k__Bacteria_p__Cyanobacteria age_at_collection 2.12606711942708e-05 524 149 1.53407510096124e-13 3.21614332930932e-11 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Oscillospira age_at_collection 0.000177753334930744 524 347 1.03274077079755e-12 2.04482672617915e-10 age_at_collection k__Bacteria_p__Cyanobacteria_c__Chloroplast age_at_collection 1.54196991280003e-05 524 128 1.8466551109213e-12 2.9915812796925e-10 age_at_collection k__Bacteria_p__Cyanobacteria_c__Chloroplast_o__Streptophyta age_at_collection 1.54196991280003e-05 524 128 1.8466551109213e-12 2.9915812796925e-10 age_at_collection k__Bacteria_p__Cyanobacteria_c__Chloroplast_o__Streptophyta_f__unclassified age_at_collection 1.54196991280003e-05 524 128 1.8466551109213e-12 2.9915812796925e-10 age_at_collection k__Bacteria_p__Cyanobacteria_c__Chloroplast_o__Streptophyta_f___g__ age_at_collection 1.54196991280003e-05 524 128 1.8466551109213e-12 2.9915812796925e-10 age_at_collection k__Bacteria_p__Proteobacteria age_at_collection -0.000768537082572184 524 524 4.30219976397377e-11 5.67890368844537e-09 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__ age_at_collection 2.71929795499119e-05 524 268 2.61548100770139e-10 2.91299197232743e-08 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Faecalibacterium age_at_collection 3.28157022820548e-05 524 297 3.0635875018247e-10 3.30867450197067e-08 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Roseburia age_at_collection 4.04925439070269e-05 524 319 1.17584007224424e-08 1.19734114785099e-06 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae age_at_collection 0.000823094649079169 524 506 4.08783740970572e-08 3.937581764376e-06 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Bacillales_f__Staphylococcaceae_g__Staphylococcus age_at_collection -2.86575614595876e-05 524 268 2.90803707661101e-07 2.41028933512596e-05 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Veillonellaceae_g__Megasphaera age_at_collection 7.75162114813029e-06 524 195 5.26058575428948e-07 4.15851488793242e-05 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales age_at_collection -0.000765332068760485 524 522 5.48401233818249e-07 4.15851488793242e-05 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae age_at_collection -0.000765332068760485 524 522 5.48401233818249e-07 4.15851488793242e-05 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Blautia age_at_collection 0.000571143802006518 524 481 7.00188583300414e-07 5.14282161726554e-05 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Bacillales_f__Staphylococcaceae age_at_collection -3.40561245768407e-05 524 308 7.07065822800257e-07 5.14282161726554e-05 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Coprococcus age_at_collection 9.74434390718988e-05 524 367 1.25325799343286e-06 8.67422795369005e-05 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__ age_at_collection 0.000100642846352289 524 336 3.92073771608002e-06 0.000218336081564206 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Ruminococcus age_at_collection 8.95892791364534e-05 524 352 8.53185769145526e-06 0.00045384389272159 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae age_at_collection -0.000139330063088834 524 521 1.16725219235215e-05 0.000611777472579861 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales age_at_collection 0.000803957940082893 524 524 1.3121793001847e-05 0.000677769134182358 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Bacillales age_at_collection -3.35970640994149e-05 524 360 4.88469958590295e-05 0.00217613366551977 age_at_collection k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f___Coprobacillaceae_ age_at_collection 0.000207219308896579 524 370 6.52632233425735e-05 0.00276902533324919 age_at_collection k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f___Coprobacillaceae__g__ age_at_collection 0.000205862425222488 524 366 7.71080545643733e-05 0.00323309537020502 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g___Ruminococcus_ age_at_collection 0.000195470673808717 524 418 9.2118657139514e-05 0.00377368843730147 age_at_collection k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f__Erysipelotrichaceae age_at_collection 7.9877834024151e-05 524 290 0.000132296716244771 0.00523894996329295 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Bacillales_f__Staphylococcaceae_g__ age_at_collection -2.07776027239765e-05 524 227 0.000242709391333615 0.00873753808801015 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__Streptococcus age_at_collection -0.000142434375883511 524 519 0.000288844193142941 0.0100925559251122 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__unclassified age_at_collection 0.000114191249184738 524 408 0.00043134099941226 0.0137779651171452 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f___g__ age_at_collection 0.000114191249184738 524 408 0.00043134099941226 0.0137779651171452 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__unclassified age_at_collection 0.000116398324068642 524 371 0.000436843450683898 0.0137779651171452 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__unclassified_f__unclassified age_at_collection 0.000116398324068642 524 371 0.000436843450683898 0.0137779651171452 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o___f___g__ age_at_collection 0.000116398324068642 524 371 0.000436843450683898 0.0137779651171452 age_at_collection k__Bacteria_p__Firmicutes_c__Erysipelotrichi_o__Erysipelotrichales_f__Erysipelotrichaceae_g___Eubacterium_ age_at_collection 7.0865499312263e-05 524 264 0.000462910751168006 0.0144720519049366 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__ age_at_collection 0.00024582961331983 524 458 0.000493969362531432 0.0153087548527133 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia age_at_collection 0.000694406656924079 524 524 0.00103068465559337 0.0301095091191375 age_at_collection k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Lachnospira age_at_collection 1.34620262302594e-05 524 286 0.00142248143733059 0.0405577907411699 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli age_at_collection -0.000241344670558202 524 524 0.0018754936274493 0.0480881963181966 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__ age_at_collection -0.000429265655474989 524 518 0.00200860903632746 0.0504078085621197 age_at_collection k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Trabulsiella age_at_collection -1.19170106641852e-05 524 223 0.00269162267272415 0.0661582290040612 age_at_collection k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales age_at_collection -0.000221182653847973 524 524 0.00380208749775905 0.0891489463290345 Any_baby_formula k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae Any_baby_formula TRUE -0.0229405364412623 524 521 0.000202776024822154 0.00737442604557302 Any_baby_formula k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__Streptococcus Any_baby_formula TRUE -0.0193909220428121 524 519 0.00169002924622172 0.0451791743982884 Breast_feeding_end k__Bacteria_p__Firmicutes_c__Clostridia_o__unclassified Breast_feeding_end TRUE 0.018905425637432 524 371 2.18458989523942e-05 0.00106655868310045 Breast_feeding_end k__Bacteria_p__Firmicutes_c__Clostridia_o__unclassified_f__unclassified Breast_feeding_end TRUE 0.018905425637432 524 371 2.18458989523942e-05 0.00106655868310045 Breast_feeding_end k__Bacteria_p__Firmicutes_c__Clostridia_o___f___g__ Breast_feeding_end TRUE 0.018905425637432 524 371 2.18458989523942e-05 0.00106655868310045 Breast_feeding_end k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Oscillospira Breast_feeding_end TRUE 0.0150138971991883 524 347 0.000521253809013393 0.0159007203516147 Breast_feeding_end k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Prevotellaceae Breast_feeding_end TRUE 0.00345859883503999 524 323 0.00405245596642642 0.092583032463742 Breast_feeding_end k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Prevotellaceae_g__Prevotella Breast_feeding_end TRUE 0.00345859883503999 524 323 0.00405245596642642 0.092583032463742 country k__Bacteria_p__Firmicutes_c__Bacilli countryRUS 0.239361344921615 524 524 6.72687455972638e-26 1.00429003313173e-22 country k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Enterococcaceae_g__ countryRUS 0.0120168621267766 524 208 7.60376570169936e-26 1.00429003313173e-22 country k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales countryRUS 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k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae_g__ deliveryvaginal 0.0173075663713387 524 368 0.000146302061710583 0.005688077155807 delivery k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae deliveryvaginal -0.116005267915209 524 506 0.000146830274504558 0.005688077155807 delivery k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales deliveryvaginal -0.144864459178356 524 524 0.000253479810369199 0.00903402044155826 delivery k__Bacteria_p__Firmicutes_c__Clostridia deliveryvaginal -0.145934058500388 524 524 0.000258719569331947 0.00912947074355504 delivery k__Bacteria_p__Bacteroidetes deliveryvaginal 0.202420871322065 524 516 0.000363097483534744 0.0123783483932832 delivery k__Bacteria_p__Bacteroidetes_c__Bacteroidia deliveryvaginal 0.202239640372552 524 516 0.000368155143010107 0.0123783483932832 delivery k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales deliveryvaginal 0.202239640372552 524 516 0.000368155143010107 0.0123783483932832 delivery k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__unclassified deliveryvaginal -0.022019245574729 524 408 0.000779659940149428 0.023155900222438 delivery k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f___g__ deliveryvaginal -0.022019245574729 524 408 0.000779659940149428 0.023155900222438 delivery k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Roseburia deliveryvaginal -0.00744667229107219 524 319 0.00082506034500378 0.0243017774346568 delivery k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Porphyromonadaceae_g__Parabacteroides deliveryvaginal 0.0276192177781545 524 287 0.00156369164753444 0.0425637242824377 delivery k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__unclassified deliveryvaginal -0.0120074172193717 524 345 0.00187358713501941 0.0480881963181966 delivery k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f___g__ deliveryvaginal -0.0120074172193717 524 345 0.00187358713501941 0.0480881963181966 delivery k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Coprococcus deliveryvaginal -0.0129680747726763 524 367 0.00202253552872703 0.0504078085621197 delivery k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae deliveryvaginal -0.0557438186539525 524 447 0.00229591609516687 0.0568239233553801 Eggs k__Bacteria_p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__Lactococcus Eggs TRUE 0.0216318177115926 524 150 0.000521993344876239 0.0159007203516147 Milk k__Bacteria_p__Firmicutes_c__Clostridia_o__Coriobacteriales_f__Coriobacteriaceae_g__Collinsella Milk TRUE 0.0208306179774169 524 268 0.00399771593450452 0.0925185687699616 Rice k__Bacteria_p__Proteobacteria_c__Epsilonproteobacteria Rice TRUE 0.00185221288638257 524 141 1.77940490428568e-07 1.54678026314004e-05 Rice k__Bacteria_p__Proteobacteria_c__Epsilonproteobacteria_o__Campylobacterales_f__Campylobacteraceae Rice TRUE 0.00185221288638257 524 141 1.77940490428568e-07 1.54678026314004e-05 seroconverted k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__ seroconverted TRUE -0.0728563209792664 524 458 3.24380606510726e-05 0.0015211743179003 seroconverted k__Bacteria_p__Firmicutes_c__Clostridia_o__unclassified seroconverted TRUE -0.0349552240812356 524 371 0.000153983573129644 0.00577681531193737 seroconverted k__Bacteria_p__Firmicutes_c__Clostridia_o__unclassified_f__unclassified seroconverted TRUE -0.0349552240812356 524 371 0.000153983573129644 0.00577681531193737 seroconverted k__Bacteria_p__Firmicutes_c__Clostridia_o___f___g__ seroconverted TRUE -0.0349552240812356 524 371 0.000153983573129644 0.00577681531193737 seroconverted k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pseudomonadales_f__Pseudomonadaceae seroconverted TRUE 0.00323382971346664 524 187 0.00172198995404073 0.0451791743982884 seroconverted k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pseudomonadales_f__Pseudomonadaceae_g__Pseudomonas seroconverted TRUE 0.00323382971346664 524 187 0.00172198995404073 0.0451791743982884 Soy k__Bacteria_p__Proteobacteria_c__Alphaproteobacteria Soy TRUE 0.0603215119950547 524 124 1.99789102668441e-08 1.97791211641757e-06 Soy k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Dorea Soy TRUE 0.00987427490048581 524 206 0.00172400889959799 0.0451791743982884 Vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__unclassified Vegetables TRUE 0.0231972024193964 524 371 6.46723396313903e-05 0.00276902533324919 Vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__unclassified_f__unclassified Vegetables TRUE 0.0231972024193964 524 371 6.46723396313903e-05 0.00276902533324919 Vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o___f___g__ Vegetables TRUE 0.0231972024193964 524 371 6.46723396313903e-05 0.00276902533324919 Vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae Vegetables TRUE 0.108594266997997 524 506 0.000123927304819843 0.0049626619593025 Vegetables k__Bacteria_p__Proteobacteria_c__Gammaproteobacteria_o__Pasteurellales_f__Pasteurellaceae_g__Actinobacillus Vegetables TRUE 0.00280564647670364 524 190 0.000526916665617176 0.0159146694598272 Vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales Vegetables TRUE 0.0978511801248003 524 524 0.0011381216898574 0.0327118201826757 Vegetables k__Bacteria_p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__ Vegetables TRUE 0.0111672356730427 524 336 0.00430798229141915 0.09779394195298