#HCclustid
#Thu Dec 22 01:17:01 EST 2005
LSID=urn\:lsid\:8080.Lavie.18.103.12.179\:genepatternmodules\:9\:6
p1_fileFormat=
p2_type=java.lang.String
p2_default_value=<input.filename>
p1_MODE=IN
p3_optional=
p4_type=java.lang.String
p3_fileFormat=
quality=development
author=Yujin Hoshida (Broad Institute)
p2_description=Output stub
p5_fileFormat=
serializedModel=
taskType=Preprocess & Utilities
requiredPatchURLs=
name=HCclustid
description=Generate sample class labels (cls files) from a hierarchical clustering result
domain=
p5_description=Generate sample information file for dChip
p4_optional=
p4_default_value=1
p2_name=output.file
language=R
pipelineModel=
p4_name=cls.start.from
p1_default_value=
p1_description=Hierarchical clustering result (Stanford .atr file of dChip Tree file)
p5_optional=
p1_type=java.io.File
os=any
p2_fileFormat=
p1_prefix_when_specified=
p3_type=java.lang.Integer
p3_prefix_when_specified=
p5_prefix_when_specified=
p2_prefix_when_specified=
p4_description=Class label as ordinal numbers start from "1" (default) or "0" in output .cls files
requiredPatchLSIDs=
p4_prefix_when_specified=
JVMLevel=2.0.1
p5_type=java.lang.String
fileFormat=cls;txt
p4_fileFormat=
p2_value=
p4_value=1\=from1;0\=from0
p1_optional=
p1_value=
p3_value=
p3_default_value=10
p5_value=T\=yes;N\=no
p1_name=input.filename
userid=hoshida@broad.mit.edu
cpuType=any
p1_TYPE=FILE
version=
p2_optional=
p3_name=min.sample
p5_default_value=N
p3_description=Minimum number of samples allowed to form a cluster
p5_name=sample.info
commandLine=<R> <libdir>hc.clustid.GP.R hc.clustid.GP <input.filename>  <output.file> <min.sample> <cls.start.from> <sample.info>
privacy=public
